Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1662

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10029 and 10030 are separated by 640 nucleotides10030 and 10031 are separated by 790 nucleotides mRNA_1661: 10029 - K13979 yahK uncharacterized zinc-type alcohol dehydrogenase-like protein, at 834,385 to 835,559 10029 mRNA_1662: 10030 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 836,200 to 837,347 10030 mRNA_1663: 10031 - ProSiteProfiles-Gram-positive cocci surface proteins LPxTG motif profile.-PS50847, at 838,138 to 838,939 10031

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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835,255 + 10029 mRNA_1661 0.74 -2.1
835,422 - 10029 mRNA_1661 0.88 -0.6
835,733 - +0.4
835,801 + +1.0
835,823 - -0.3
835,843 + -0.3
835,857 - -0.3
835,971 + -0.1
835,996 - -3.4
836,183 + +0.8
836,275 + +1.3
836,337 + 10030 mRNA_1662 0.12 +0.1
836,484 + 10030 mRNA_1662 0.25 -0.7
836,574 - 10030 mRNA_1662 0.33 +0.2
836,998 - 10030 mRNA_1662 0.70 +0.4
837,010 - 10030 mRNA_1662 0.71 -0.3
837,340 - +0.6
837,461 + -0.2
837,669 + -0.4
837,882 + -0.5

Or see this region's nucleotide sequence