Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1687

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10054 and 10055 are separated by 789 nucleotides mRNA_1686: 10054 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 887,231 to 890,283 10054 mRNA_1687: 10055 - K02969 RP-S20e, RPS20 small subunit ribosomal protein S20e, at 891,073 to 891,798 10055

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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890,232 + -0.6
890,269 - +1.1
890,279 - -0.4
890,425 + -0.1
890,536 - -1.0
890,570 - -0.2
890,576 + -1.7
890,617 - +1.0
890,691 - +1.7
890,698 - +0.1
890,701 - -0.9
890,712 + +0.8
890,719 + -1.4
890,723 - +0.3
890,730 + +0.4
890,737 + +0.5
890,747 + -1.8
890,750 - +0.9
890,774 + +0.5
891,949 + -0.6
892,077 + +0.5
892,209 - -0.2
892,226 + +3.4
892,241 + +0.5
892,361 - -1.1
892,477 + +0.4
892,499 - -0.6
892,520 - -0.2
892,539 + -1.7
892,582 - +0.2
892,632 + +0.4
892,633 - -0.3
892,652 + -1.0
892,660 - +1.8
892,688 - -1.7
892,715 + -0.8

Or see this region's nucleotide sequence