Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1706

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10074 and 10075 overlap by 4 nucleotides mRNA_1706: 10074 - K08286 E2.7.11.- protein-serine/threonine kinase, at 343 to 1,191 10074 mRNA_1707: 10075 - BLAST related to SNF1-related protein kinase KIN10 [Melanop..., at 1,188 to 2,835 10075

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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26 + -1.6
27 + -1.4
28 + -0.1
31 + +1.5
31 + -0.6
41 + -0.2
66 + -0.6
72 - +0.6
72 - -1.1
93 + -1.4
104 + -2.2
105 + +0.8
108 + -0.3
120 - +1.1
128 + -0.4
135 - +1.4
136 + -0.2
136 - -0.0
137 - -0.4
137 - -0.9
138 + +0.2
139 + -0.6
141 - -1.5
150 - +0.1
151 - -2.5
155 + +0.3
155 + -1.0
156 + -0.1
158 + -1.0
173 - -0.1
175 + +0.1
180 - -0.2
215 + -0.3
220 - +1.4
234 + +0.9
254 - +0.3
283 + -1.4
304 + +0.7
322 + +0.1
324 + +0.6
427 + +0.6
453 + 10074 mRNA_1706 0.13 +0.2
465 - 10074 mRNA_1706 0.14 +1.1
482 + 10074 mRNA_1706 0.16 -1.1
493 - 10074 mRNA_1706 0.18 +0.0
647 + 10074 mRNA_1706 0.36 +1.0
683 - 10074 mRNA_1706 0.40 +0.5
809 + 10074 mRNA_1706 0.55 +1.5
842 - 10074 mRNA_1706 0.59 +0.4
844 + 10074 mRNA_1706 0.59 -0.2
848 - 10074 mRNA_1706 0.59 -0.4
902 + 10074 mRNA_1706 0.66 +2.0
949 - 10074 mRNA_1706 0.71 +3.5
949 - 10074 mRNA_1706 0.71 +0.9
950 + 10074 mRNA_1706 0.71 +2.4
974 - 10074 mRNA_1706 0.74 -0.3
1,016 + 10074 mRNA_1706 0.79 +0.2
1,065 + 10074 mRNA_1706 0.85 -0.4
1,118 + +0.9
1,142 + +0.5
1,155 + +0.8
1,272 - -0.6
1,281 + +0.4
1,573 + 10075 mRNA_1707 0.23 +0.6
1,625 + 10075 mRNA_1707 0.27 +1.2
1,625 + 10075 mRNA_1707 0.27 +1.4
1,628 + 10075 mRNA_1707 0.27 +0.7
1,646 + 10075 mRNA_1707 0.28 +0.8
1,649 - 10075 mRNA_1707 0.28 -0.0
1,680 + 10075 mRNA_1707 0.30 +0.9
1,781 + 10075 mRNA_1707 0.36 +0.9
1,926 + 10075 mRNA_1707 0.45 +0.1
1,996 + 10075 mRNA_1707 0.49 +0.9
2,005 - 10075 mRNA_1707 0.50 -0.3
2,010 - 10075 mRNA_1707 0.50 +0.9
2,033 + 10075 mRNA_1707 0.51 +1.2
2,068 + 10075 mRNA_1707 0.53 +0.8
2,076 + 10075 mRNA_1707 0.54 -1.0

Or see this region's nucleotide sequence