Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1814

Experiment: Sorted Low BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10181 and 10182 are separated by 561 nucleotides mRNA_1813: 10181 - K04352 RASA1, RASGAP Ras GTPase-activating protein 1, at 269,173 to 274,604 10181 mRNA_1814: 10182 - K00858 ppnK, NADK NAD+ kinase, at 275,166 to 278,698 10182

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
remove
274,633 - -2.2
274,909 + -1.3
275,050 + +0.3
275,172 - -0.8
275,184 + +0.0
275,190 + -0.4
275,190 + +0.4
275,191 + +1.0
275,199 - -2.7
275,199 + -0.3
275,200 - -2.2
275,203 + -1.3
275,207 + +0.8
275,340 - -0.5
275,342 - +2.2
275,350 + -0.6
275,353 - -1.6
275,374 - +0.3
275,512 - -1.4
275,515 - -1.9
275,520 + 10182 mRNA_1814 0.10 -0.8
275,690 - 10182 mRNA_1814 0.15 +0.7
275,798 - 10182 mRNA_1814 0.18 -1.3
275,802 + 10182 mRNA_1814 0.18 +0.0
275,848 + 10182 mRNA_1814 0.19 -1.0
276,553 + 10182 mRNA_1814 0.39 +0.3
276,806 - 10182 mRNA_1814 0.46 +0.9
276,821 - 10182 mRNA_1814 0.47 +1.1
276,821 + 10182 mRNA_1814 0.47 +1.1
277,426 - 10182 mRNA_1814 0.64 -0.2
277,558 - 10182 mRNA_1814 0.68 +0.6
278,177 - 10182 mRNA_1814 0.85 -0.1
278,437 + -1.5
278,571 - -0.4
278,586 - -1.6
278,603 + +2.5
278,859 - +0.2
278,871 - +0.6
279,025 - -0.5
279,153 - -0.2
279,154 - +0.3
279,168 + -0.2
279,183 - -0.7
279,395 - +0.3

Or see this region's nucleotide sequence