Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1834

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10201 and 10202 are separated by 176 nucleotides10202 and 10203 are separated by 380 nucleotides mRNA_1833: 10201 - Hypothetical Protein, at 322,426 to 322,877 10201 mRNA_1834: 10202 - Hypothetical Protein, at 323,054 to 324,268 10202 mRNA_1835: 10203 - K10601 SYVN1, HRD1 E3 ubiquitin-protein ligase synoviolin, at 324,649 to 327,501 10203

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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322,153 - +1.4
322,181 + +0.3
322,184 + -0.0
322,191 + +0.6
322,194 + +1.1
322,194 + -3.1
322,224 + -0.6
322,235 - -2.1
322,329 - -1.9
322,334 + -0.3
322,481 - 10201 mRNA_1833 0.12 -2.0
322,884 + -0.6
322,904 + +0.6
323,235 + 10202 mRNA_1834 0.15 +1.5
323,273 + 10202 mRNA_1834 0.18 +0.3
323,354 - 10202 mRNA_1834 0.25 +1.3
323,369 - 10202 mRNA_1834 0.26 +1.2
323,983 - 10202 mRNA_1834 0.76 -1.9
324,373 - -1.0
324,383 - +0.9
324,813 + +0.1
325,115 - 10203 mRNA_1835 0.16 -2.0

Or see this region's nucleotide sequence