Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1920

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10287 and 10288 are separated by 305 nucleotides10288 and 10289 are separated by 638 nucleotides mRNA_1919: 10287 - K11340 ACTL6A, INO80K actin-like protein 6A, at 513,454 to 515,296 10287 mRNA_1920: 10288 - Hypothetical Protein, at 515,602 to 517,203 10288 mRNA_1921: 10289 - KOG4373 Predicted 3'-5' exonuclease, at 517,842 to 518,810 10289

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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515,533 + -1.6
515,539 - -1.5
515,810 - 10288 mRNA_1920 0.13 +1.1
515,954 + 10288 mRNA_1920 0.22 -0.7
516,274 - 10288 mRNA_1920 0.42 -1.0
516,825 + 10288 mRNA_1920 0.76 -0.9
517,127 + -1.7
517,400 + -0.8
517,416 + -5.1
517,456 + -0.8
517,484 + -2.2
517,496 + -0.2
517,509 + +0.5
517,511 + -0.6
517,520 - -0.1
517,526 - +0.4
517,533 - -1.3
517,540 - -2.9
517,541 - +0.6
517,553 - -0.5
517,606 - +0.3
517,738 + -0.7
518,026 + 10289 mRNA_1921 0.19 -0.5

Or see this region's nucleotide sequence