Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1987

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10354 and 10355 are separated by 690 nucleotides10355 and 10356 are separated by 59 nucleotides mRNA_1986: 10354 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 673,978 to 676,416 10354 mRNA_1987: 10355 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 677,107 to 679,198 10355 mRNA_1988: 10356 - KOG1674 Cyclin, at 679,258 to 681,059 10356

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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676,428 - -1.1
676,566 - +0.1
676,605 + +0.4
676,729 - +0.4
676,834 - +0.1
676,890 + -3.7
677,009 - +1.3
677,173 - -2.5
677,187 + -0.7
677,320 - 10355 mRNA_1987 0.10 +1.4
677,670 - 10355 mRNA_1987 0.27 +1.6
677,788 + 10355 mRNA_1987 0.33 +0.6
678,779 - 10355 mRNA_1987 0.80 -1.4
678,981 - 10355 mRNA_1987 0.90 -0.7
679,171 + -0.1
679,198 + +0.2
679,209 + -2.8
679,414 - -1.9
679,455 - 10356 mRNA_1988 0.11 -1.2
679,691 + 10356 mRNA_1988 0.24 -0.9
679,760 - 10356 mRNA_1988 0.28 -1.0
679,773 - 10356 mRNA_1988 0.29 +0.4
679,997 + 10356 mRNA_1988 0.41 -0.1
680,108 - 10356 mRNA_1988 0.47 -0.2
680,124 - 10356 mRNA_1988 0.48 -0.1
680,131 + 10356 mRNA_1988 0.48 +0.0
680,198 + 10356 mRNA_1988 0.52 +0.7

Or see this region's nucleotide sequence