Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1990

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10357 and 10358 are separated by 116 nucleotides10358 and 10359 are separated by 924 nucleotides mRNA_1989: 10357 - KOG0551 Hsp90 co-chaperone CNS1 (contains TPR repeats), at 682,690 to 684,207 10357 mRNA_1990: 10358 - HMMPfam-PPR repeat-PF01535,HMMPfam-Pentatricopeptide repeat domain-PF13812,ProSiteProfiles-Pentatricopeptide (PPR) repeat profile.-PS51375,TIGRFAM-PPR pentatricopeptide repeat domain-TIGR00756, at 684,324 to 686,633 10358 mRNA_1991: 10359 - K03457 TC.NCS1 nucleobase-cation symporter-1, NCS1 family, at 687,558 to 690,393 10359

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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684,248 - -0.9
684,252 - +0.6
684,267 + -0.7
684,274 - -4.1
686,704 - -1.9
686,833 + -0.9
686,844 + +0.1
686,848 + -1.0
686,882 + -0.2
686,909 - +0.1
686,992 + +0.8
686,992 - -0.8
687,019 - -0.9
687,043 - -1.4
687,047 + +0.2
687,052 + -2.5
687,057 + -3.0
687,063 + +0.4
687,064 - +0.4
687,065 + -1.8
687,119 + -1.0
687,122 + +0.9
687,129 - +0.9
687,129 - -0.3
687,132 - -1.3
687,136 + -1.4
687,138 + -0.1
687,146 - -2.1
687,146 - +0.7
687,166 + -2.7
687,173 + -1.5
687,201 + -0.8
687,348 - -1.9
687,349 + -1.6
687,483 + +0.4

Or see this region's nucleotide sequence