Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2149

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10516 and 10517 are separated by 124 nucleotides10517 and 10518 are separated by 376 nucleotides mRNA_2148: 10516 - KOG2490 Predicted membrane protein, at 188,421 to 191,027 10516 mRNA_2149: 10517 - K12948 SPCS3, SPC3 signal peptidase complex subunit 3, at 191,152 to 191,850 10517 mRNA_2150: 10518 - Hypothetical Protein, at 192,227 to 192,680 10518

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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190,282 - 10516 mRNA_2148 0.71 -1.4
190,398 + 10516 mRNA_2148 0.76 -1.1
190,539 - 10516 mRNA_2148 0.81 -1.5
190,595 + 10516 mRNA_2148 0.83 -1.6
190,760 + 10516 mRNA_2148 0.90 -0.3
190,853 + -1.6
190,891 + -3.3
191,024 - -1.6
191,042 + +0.6
191,043 + -2.8
191,056 - +0.3
191,132 - +0.6
191,205 + -0.2
192,076 + -0.0
192,078 + +1.6
192,220 + +0.0
192,653 + -2.0

Or see this region's nucleotide sequence