Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2215

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10582 and 10583 are separated by 138 nucleotides10583 and 10584 are separated by 367 nucleotides mRNA_2214: 10582 - K06970 rlmF 23S rRNA (adenine1618-N6)-methyltransferase, at 376,563 to 378,868 10582 mRNA_2215: 10583 - K01737 queD, ptpS, PTS 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase, at 379,007 to 379,807 10583 mRNA_2216: 10584 - BLAST Oligosaccharide translocation protein RFT1 [Termitomy..., at 380,175 to 381,550 10584

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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378,430 + 10582 mRNA_2214 0.81 -0.6
378,697 + -1.0
379,114 - 10583 mRNA_2215 0.13 -0.9
379,131 - 10583 mRNA_2215 0.15 +0.5
379,279 - 10583 mRNA_2215 0.34 -0.7
379,571 + 10583 mRNA_2215 0.70 -0.9
379,702 - 10583 mRNA_2215 0.87 +0.0
379,815 - +0.6
379,834 - +1.9
379,838 - +1.0
380,007 + +0.6
380,024 - +0.3
380,116 - +0.3
380,116 + -0.1
380,139 + +1.8
380,290 - +0.3
380,296 - -0.8
380,586 + 10584 mRNA_2216 0.30 -0.8
380,731 - 10584 mRNA_2216 0.40 +0.4

Or see this region's nucleotide sequence