Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2257

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10624 and 10625 are separated by 303 nucleotides10625 and 10626 are separated by 63 nucleotides mRNA_2256: 10624 - K14293 KPNB1, IPO1 importin subunit beta-1, at 472,511 to 475,600 10624 mRNA_2257: 10625 - K12626 LSM7 U6 snRNA-associated Sm-like protein LSm7, at 475,904 to 476,538 10625 mRNA_2258: 10626 - K04627 STE3 pheromone a factor receptor, at 476,602 to 477,940 10626

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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475,655 - -1.0
475,661 + -0.2
475,734 + -0.4
475,743 - +0.5
475,746 + -0.8
475,748 - -3.7
475,749 - +0.3
475,862 + -1.0
476,617 - -1.6
476,630 + +0.0
476,741 - 10626 mRNA_2258 0.10 -0.6
476,897 - 10626 mRNA_2258 0.22 -0.5
476,907 + 10626 mRNA_2258 0.23 +0.4
477,034 + 10626 mRNA_2258 0.32 +0.6
477,207 + 10626 mRNA_2258 0.45 +0.3
477,279 + 10626 mRNA_2258 0.51 +0.5
477,300 + 10626 mRNA_2258 0.52 +0.9
477,327 + 10626 mRNA_2258 0.54 +0.5
477,469 + 10626 mRNA_2258 0.65 -0.0

Or see this region's nucleotide sequence