Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2286

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10653 and 10654 are separated by 192 nucleotides10654 and 10655 are separated by 943 nucleotides mRNA_2285: 10653 - SUPERFAMILY--SSF53300, at 526,661 to 528,036 10653 mRNA_2286: 10654 - Hypothetical Protein, at 528,229 to 530,268 10654 mRNA_2287: 10655 - KOG3870 Uncharacterized conserved protein, at 531,212 to 533,990 10655

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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527,297 + 10653 mRNA_2285 0.46 -1.0
527,326 - 10653 mRNA_2285 0.48 +0.3
527,334 - 10653 mRNA_2285 0.49 +1.5
527,347 - 10653 mRNA_2285 0.50 -1.5
527,645 - 10653 mRNA_2285 0.72 +1.2
527,954 - -0.5
528,213 - -0.5
528,225 - -2.9
528,392 + -0.2
529,100 - 10654 mRNA_2286 0.43 -1.1
529,108 - 10654 mRNA_2286 0.43 -0.7
529,404 - 10654 mRNA_2286 0.58 -0.1
530,363 - +0.4
530,368 - -0.6
530,372 + +0.4
530,391 + +1.4
530,486 - +0.6
530,562 - -0.8
530,575 + -0.8
530,592 - +0.0
530,601 + -1.4
530,610 + -0.1
530,613 - +1.0
530,639 - -3.8
530,639 + -0.2
530,652 + +0.9
530,678 + -0.7
530,684 + -0.1
530,708 + -0.4
530,714 + +0.6
530,714 + -0.2
530,726 - -0.9
530,727 - -1.0
530,727 + -0.9
530,728 + -1.5
530,771 - +0.1
530,824 - +0.1
530,835 + -0.3
530,840 - -0.2
530,898 + -0.5
530,899 - +0.2
530,900 - -1.2
530,900 - +0.0
530,904 + -0.1
530,904 + -0.2
530,904 - -0.4
530,905 + -3.2
530,911 - +0.7
530,914 + -1.1
530,923 + -0.8
530,923 - -2.2
530,923 + -1.1
530,923 - +0.4
530,928 - -0.1
530,929 + -0.0
530,929 + -0.2
530,930 + -0.8
530,932 - +0.1
530,933 + -0.1
530,934 - -1.1
530,939 - -0.9
530,944 + +0.1
530,945 + -0.6
530,945 + +1.2
530,952 - -1.8
530,958 + +0.7
530,959 + -0.7
530,961 - -0.8
530,967 + -1.5
531,036 + +1.4
531,059 - +0.4
531,061 + +1.2
531,070 - -1.3
531,097 + +2.3
531,101 - +0.5
531,109 + +0.3
531,117 + -0.5
531,117 - -0.7
531,121 + +0.0
531,126 + +0.9
531,129 + -1.9
531,132 + +0.3
531,199 - +1.9
531,261 + +0.9
531,264 - -1.0

Or see this region's nucleotide sequence