Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2316

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10683 and 10684 are separated by 905 nucleotides10684 and 10685 are separated by 745 nucleotides mRNA_2315: 10683 - SUPERFAMILY--SSF160369, at 589,518 to 590,435 10683 mRNA_2316: 10684 - K02889 RP-L21e, RPL21 large subunit ribosomal protein L21e, at 591,341 to 591,961 10684 mRNA_2317: 10685 - K02264 COX5A cytochrome c oxidase subunit 5a, at 592,707 to 594,114 10685

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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590,356 - +0.0
590,356 - +0.5
590,357 + -0.9
590,382 + +0.2
590,382 + -0.2
590,393 - -0.2
590,517 - +3.6
590,519 + -1.3
590,528 + -2.2
592,167 + -0.6
592,192 - +0.2
592,196 - +0.6
592,322 + -2.2
592,615 - -0.3
592,618 + +0.3
592,624 - -0.1
592,624 + +0.3
592,626 + -0.3
592,630 - +0.4
592,642 - +1.8
592,647 - +1.2
592,658 + -1.5
592,670 - -2.2

Or see this region's nucleotide sequence