Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2382

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10749 and 10750 are separated by 130 nucleotides10750 and 10751 are separated by 590 nucleotides mRNA_2381: 10749 - KOG4660 Protein Mei2, essential for commitment to meiosis, and related proteins, at 757,956 to 760,560 10749 mRNA_2382: 10750 - HMMPfam-Zinc-binding loop region of homing endonuclease-PF05551,SUPERFAMILY--SSF54060, at 760,691 to 762,074 10750 mRNA_2383: 10751 - Hypothetical Protein, at 762,665 to 764,140 10751

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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759,910 - 10749 mRNA_2381 0.75 -1.7
760,049 - 10749 mRNA_2381 0.80 +0.1
760,347 - -1.9
761,121 - 10750 mRNA_2382 0.31 -1.4
761,828 - 10750 mRNA_2382 0.82 -1.0
761,973 - -0.9
761,981 + -0.6
762,117 + +0.4
762,141 + -0.5
762,261 + -0.0
762,294 - -0.3
762,426 + -0.4
762,555 - -0.1
762,579 + -0.5
762,582 + +0.0
762,710 - -0.2
762,720 - -1.0
762,725 - +0.2
762,731 - -1.0
762,741 - +0.2
762,871 + 10751 mRNA_2383 0.14 +0.5
762,877 + 10751 mRNA_2383 0.14 -0.3
762,902 - 10751 mRNA_2383 0.16 +0.3
763,002 - 10751 mRNA_2383 0.23 -0.0
763,007 + 10751 mRNA_2383 0.23 -0.4
763,038 - 10751 mRNA_2383 0.25 -1.1
763,041 + 10751 mRNA_2383 0.25 -0.2
763,047 + 10751 mRNA_2383 0.26 +0.1
763,051 + 10751 mRNA_2383 0.26 +1.4
763,056 - 10751 mRNA_2383 0.26 +0.7
763,064 - 10751 mRNA_2383 0.27 -1.4
763,072 + 10751 mRNA_2383 0.28 -1.1

Or see this region's nucleotide sequence