Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2404

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10771 and 10772 are separated by 344 nucleotides mRNA_2403: 10771 - HMMPfam-Protein of unknown function (DUF2462)-PF09495, at 37,174 to 37,596 10771 mRNA_2404: 10772 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,SUPERFAMILY--SSF51445, at 37,941 to 40,154 10772

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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36,945 - -1.0
36,951 + -0.4
36,958 + +0.5
36,963 + +0.3
36,963 + -0.2
36,964 - +0.2
36,989 + -2.2
37,071 + -0.9
37,122 - +0.0
37,401 + 10771 mRNA_2403 0.54 -0.5
37,579 + +0.5
37,802 + -0.6
37,808 - -0.4
37,860 - -0.6
37,863 + -0.4
37,864 + +1.0
37,983 + +1.4
38,036 + -3.3
38,291 + 10772 mRNA_2404 0.16 +0.5
38,306 - 10772 mRNA_2404 0.16 -0.1
38,454 - 10772 mRNA_2404 0.23 +1.2
38,589 + 10772 mRNA_2404 0.29 -1.6
38,733 - 10772 mRNA_2404 0.36 +0.2
38,829 + 10772 mRNA_2404 0.40 +0.1
38,863 - 10772 mRNA_2404 0.42 +0.6
38,909 - 10772 mRNA_2404 0.44 -0.7
38,992 + 10772 mRNA_2404 0.47 +0.3
39,148 - 10772 mRNA_2404 0.55 -1.4
39,393 + 10772 mRNA_2404 0.66 -0.8
39,421 + 10772 mRNA_2404 0.67 -1.4
39,688 - 10772 mRNA_2404 0.79 +0.7
39,726 - 10772 mRNA_2404 0.81 +0.3
39,808 - 10772 mRNA_2404 0.84 -2.7
39,812 - 10772 mRNA_2404 0.85 -2.8
39,908 + 10772 mRNA_2404 0.89 -0.7
39,991 + -0.5
40,067 - -0.4
40,139 - +0.3
40,281 - -1.9
40,456 + +0.6
40,475 + +0.4
40,614 - -0.5
40,741 - -2.9
40,754 - +0.6
40,765 + -2.2
40,767 - -2.0
40,782 - +0.3
40,786 + -1.1
40,807 - -1.2
40,813 + -1.5
40,815 + -1.3
40,883 - -0.5
40,913 - -1.9
40,962 + -0.8
41,050 + -0.3
41,087 - -2.7
41,090 + -3.2
41,108 + -1.9
41,128 + +0.1

Or see this region's nucleotide sequence