Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2454

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10821 and 10822 are separated by 985 nucleotides10822 and 10823 are separated by 138 nucleotides mRNA_2453: 10821 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 166,755 to 168,701 10821 mRNA_2454: 10822 - K12823 DDX5, DBP2 ATP-dependent RNA helicase DDX5/DBP2, at 169,687 to 172,594 10822 mRNA_2455: 10823 - K16912 LAS1 ribosomal biogenesis protein LAS1, at 172,733 to 174,671 10823

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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168,737 + -1.7
168,756 - +1.6
168,778 - -1.3
168,790 + -2.3
168,792 + +0.1
168,794 + +1.0
168,797 + -1.9
168,797 + -0.8
168,802 - -0.9
168,804 + -0.7
168,808 - -0.5
168,818 + -1.8
168,819 - +1.1
168,821 - +1.0
168,822 + +2.0
168,824 + +0.0
168,824 + +0.0
168,840 + +0.3
168,846 + -0.4
168,861 - +0.4
168,883 - -0.7
168,912 - -2.5
168,921 + -0.9
168,925 - +0.5
168,944 + -0.2
168,949 + -1.4
168,953 + -0.2
168,953 - -1.0
168,965 - -0.9
168,965 + +0.9
168,967 + -1.1
168,973 - -1.7
169,002 - -0.2
169,006 - +1.9
169,009 - +0.2
169,010 - +0.8
169,012 + -0.4
169,013 - -0.4
169,019 + -1.8
169,023 - -1.8
169,025 - +0.8
169,025 - -0.1
169,026 + -0.1
169,027 - -2.6
169,034 + -2.3
169,036 - +0.8
169,041 - -0.1
169,041 - -3.7
169,046 + -1.9
169,048 - -0.3
169,048 - -0.6
169,050 - +0.3
169,053 + -0.3
169,053 + -0.4
169,057 - -1.2
169,059 + +1.1
169,089 - -2.7
169,090 - -2.3
169,097 - -1.2
169,101 + -1.0
169,101 + +1.8
169,102 + -0.2
169,103 + +0.0
169,105 + -0.6
169,106 + -0.2
169,107 + +1.0
169,107 - -0.6
169,108 + -1.0
169,110 - +0.4
169,119 - +0.6
169,124 + -0.9
169,138 + -0.1
169,155 - -0.7
169,172 - -0.4
169,178 + -1.0
169,179 - -1.9
169,184 - -1.9
169,185 + -2.1
169,198 + -0.9
169,211 - +0.2
169,291 - -0.6
169,300 + -1.2
169,450 + -1.5
169,683 + -3.1
169,725 - -1.8
169,725 + -2.4
172,656 - -0.4
172,669 - -0.8
172,672 - +0.3
172,672 - -0.3
172,675 + -1.4
172,677 + -0.8
172,678 + +0.4
172,684 - -0.8
172,692 - -0.2
172,693 - -0.6
172,695 - +0.0
172,701 - -1.1

Or see this region's nucleotide sequence