Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2703

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11070 and 11071 are separated by 298 nucleotides11071 and 11072 are separated by 868 nucleotides mRNA_2702: 11070 - BLAST TRAF-like [Xanthophyllomyces dendrorhous], at 41,116 to 42,334 11070 mRNA_2703: 11071 - Hypothetical Protein, at 42,633 to 43,267 11071 mRNA_2704: 11072 - SUPERFAMILY--SSF54695, at 44,136 to 45,724 11072

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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41,677 + 11070 mRNA_2702 0.46 +0.8
41,716 + 11070 mRNA_2702 0.49 -0.0
41,746 - 11070 mRNA_2702 0.52 +0.9
41,800 - 11070 mRNA_2702 0.56 -1.3
41,909 + 11070 mRNA_2702 0.65 -0.7
41,912 - 11070 mRNA_2702 0.65 +0.7
41,925 + 11070 mRNA_2702 0.66 -1.8
42,073 - 11070 mRNA_2702 0.79 -1.1
42,181 + 11070 mRNA_2702 0.87 -2.0
42,240 + -0.7
42,267 + +0.3
42,267 - -0.4
42,267 - -1.6
42,377 - -0.9
42,466 - +0.1
42,566 - -1.3
42,617 - -0.3
42,669 + +0.9
42,952 + 11071 mRNA_2703 0.50 +0.6
42,953 + 11071 mRNA_2703 0.50 +0.2
42,958 + 11071 mRNA_2703 0.51 -0.4
42,964 - 11071 mRNA_2703 0.52 -1.8
42,968 - 11071 mRNA_2703 0.53 +1.0
43,098 - 11071 mRNA_2703 0.73 -0.9
43,130 - 11071 mRNA_2703 0.78 -0.0
43,249 + -1.3
43,249 - -1.1
43,404 + -1.5
43,406 - -1.2
43,542 + +0.5
43,545 - +1.3
43,734 - +1.1

Or see this region's nucleotide sequence