Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2725

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11092 and 11093 are separated by 705 nucleotides11093 and 11094 are separated by 338 nucleotides mRNA_2724: 11092 - HMMPfam-Ribosomal protein L30p/L7e-PF00327,SUPERFAMILY--SSF55129, at 82,286 to 82,840 11092 mRNA_2725: 11093 - HMMPfam-NADH-ubiquinone reductase complex 1 MLRQ subunit-PF06522, at 83,546 to 84,542 11093 mRNA_2726: 11094 - K01725 cynS cyanate lyase, at 84,881 to 85,852 11094

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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82,935 - -0.5
82,948 - -0.4
83,202 - +0.1
83,215 - -2.5
83,218 - -1.9
83,402 - +1.5
83,522 - -0.9
83,686 + 11093 mRNA_2725 0.14 -1.2
83,690 - 11093 mRNA_2725 0.14 +0.8
83,975 + 11093 mRNA_2725 0.43 +0.6
84,242 - 11093 mRNA_2725 0.70 -0.3
84,298 - 11093 mRNA_2725 0.75 -0.2
84,299 + 11093 mRNA_2725 0.76 -1.9
84,310 + 11093 mRNA_2725 0.77 +0.3
84,317 + 11093 mRNA_2725 0.77 -0.5
84,394 - 11093 mRNA_2725 0.85 -0.7
84,428 - 11093 mRNA_2725 0.88 -3.0
84,439 - 11093 mRNA_2725 0.90 +0.7
84,440 + 11093 mRNA_2725 0.90 +0.1
84,476 - +1.1
84,479 - +0.5
84,482 + +1.4
84,486 - +0.5
84,561 - -0.1
84,586 + -0.7
84,695 + -0.4
84,754 - +0.2
85,197 + 11094 mRNA_2726 0.33 -0.3
85,208 + 11094 mRNA_2726 0.34 +0.4
85,489 - 11094 mRNA_2726 0.63 +0.5
85,503 - 11094 mRNA_2726 0.64 -0.8

Or see this region's nucleotide sequence