Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2792

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11159 and 11160 are separated by 296 nucleotides11160 and 11161 are separated by 28 nucleotides mRNA_2791: 11159 - K05544 DUS3 tRNA-dihydrouridine synthase 3, at 222,568 to 225,746 11159 mRNA_2792: 11160 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 226,043 to 228,012 11160 mRNA_2793: 11161 - KOG3834 Golgi reassembly stacking protein GRASP65, contains PDZ domain, at 228,041 to 229,604 11161

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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225,092 + 11159 mRNA_2791 0.79 +0.1
225,245 + 11159 mRNA_2791 0.84 -0.8
225,328 + 11159 mRNA_2791 0.87 -2.4
225,407 - 11159 mRNA_2791 0.89 -1.2
225,715 + +1.0
225,717 - -2.5
226,194 + -1.7
226,424 - 11160 mRNA_2792 0.19 +1.6
226,426 - 11160 mRNA_2792 0.19 +1.0
226,629 + 11160 mRNA_2792 0.30 +0.0
226,710 - 11160 mRNA_2792 0.34 -0.7
226,734 - 11160 mRNA_2792 0.35 -0.3
226,755 + 11160 mRNA_2792 0.36 -1.4
226,755 - 11160 mRNA_2792 0.36 -0.0
226,782 - 11160 mRNA_2792 0.38 -0.6
226,850 + 11160 mRNA_2792 0.41 -0.5
226,853 - 11160 mRNA_2792 0.41 -0.5
227,080 - 11160 mRNA_2792 0.53 +0.6
227,277 + 11160 mRNA_2792 0.63 -0.6
227,436 - 11160 mRNA_2792 0.71 -1.5
227,732 + 11160 mRNA_2792 0.86 -0.6
227,755 + 11160 mRNA_2792 0.87 -0.4
227,811 - 11160 mRNA_2792 0.90 +1.0
227,816 + -0.4
227,817 - -1.3
227,824 - -2.3
227,826 + +0.0
227,828 + +0.1
227,830 + -1.2
227,837 + +0.2
228,082 - -0.5
228,104 - +2.4
228,123 + -0.9
228,123 + -0.4
228,299 + 11161 mRNA_2793 0.16 +0.8
228,303 + 11161 mRNA_2793 0.17 -1.7
228,390 - 11161 mRNA_2793 0.22 -0.5
228,549 + 11161 mRNA_2793 0.32 +0.4
228,563 + 11161 mRNA_2793 0.33 -0.1
228,707 + 11161 mRNA_2793 0.43 +1.0
228,740 + 11161 mRNA_2793 0.45 +1.1
228,830 - 11161 mRNA_2793 0.50 -0.1

Or see this region's nucleotide sequence