Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2830

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11197 and 11198 are separated by 234 nucleotides11198 and 11199 are separated by 314 nucleotides mRNA_2829: 11197 - Hypothetical Protein, at 313,817 to 315,093 11197 mRNA_2830: 11198 - BLAST 60S ribosomal protein L33-A [Wallemia ichthyophag..., at 315,328 to 317,739 11198 mRNA_2831: 11199 - HMMPfam-short chain dehydrogenase-PF00106,PRINTS-Glucose/ribitol dehydrogenase family signature-PR00081,SMART--SM00822,SUPERFAMILY--SSF51735, at 318,054 to 319,183 11199

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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314,330 + 11197 mRNA_2829 0.40 +0.0
314,438 - 11197 mRNA_2829 0.49 -0.0
314,458 - 11197 mRNA_2829 0.50 -1.2
314,618 - 11197 mRNA_2829 0.63 -2.0
314,618 + 11197 mRNA_2829 0.63 +1.0
314,741 - 11197 mRNA_2829 0.72 +0.5
315,031 - -0.8
315,053 + -3.8
315,069 + -1.7
315,618 + 11198 mRNA_2830 0.12 -0.6
315,749 + 11198 mRNA_2830 0.17 -0.5
316,254 + 11198 mRNA_2830 0.38 -1.7
316,450 - 11198 mRNA_2830 0.47 +0.3
316,490 + 11198 mRNA_2830 0.48 -0.6
316,576 - 11198 mRNA_2830 0.52 +3.2
316,623 + 11198 mRNA_2830 0.54 +0.3
316,647 + 11198 mRNA_2830 0.55 -0.8
316,833 + 11198 mRNA_2830 0.62 +0.3
316,885 + 11198 mRNA_2830 0.65 -0.4
317,213 - 11198 mRNA_2830 0.78 -0.9
317,493 + 11198 mRNA_2830 0.90 -0.1
317,635 + -0.0
318,085 + -1.0
318,275 + 11199 mRNA_2831 0.20 -1.5
318,672 + 11199 mRNA_2831 0.55 -0.6

Or see this region's nucleotide sequence