Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2890

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11257 and 11258 are separated by 271 nucleotides11258 and 11259 are separated by 700 nucleotides mRNA_2889: 11257 - K08184 SLC16A7 MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 7, at 466,050 to 468,099 11257 mRNA_2890: 11258 - HMMPfam-Protein of unknown function (DUF2823)-PF11034, at 468,371 to 468,835 11258 mRNA_2891: 11259 - Hypothetical Protein, at 469,536 to 470,476 11259

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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467,667 - 11257 mRNA_2889 0.79 -1.4
467,987 - -0.5
468,062 + -1.7
468,202 - -1.3
468,317 - +0.6
468,350 + -1.0
468,589 + 11258 mRNA_2890 0.47 -2.1
468,825 + -0.9
469,315 - +0.9
469,336 + +0.4

Or see this region's nucleotide sequence