Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2942

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11309 and 11310 are separated by 94 nucleotides11310 and 11311 are separated by 201 nucleotides mRNA_2941: 11309 - BLAST IncA domain protein [Rhizoctonia solani AG-3 Rhs1AP], at 607,263 to 608,329 11309 mRNA_2942: 11310 - HMMPfam-VanZ like family-PF04892, at 608,424 to 609,485 11310 mRNA_2943: 11311 - KOG1902 Putative signal transduction protein involved in RNA splicing, at 609,687 to 613,545 11311

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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607,498 - 11309 mRNA_2941 0.22 -0.3
607,615 - 11309 mRNA_2941 0.33 -0.7
607,649 - 11309 mRNA_2941 0.36 -0.1
607,948 + 11309 mRNA_2941 0.64 -1.5
608,075 - 11309 mRNA_2941 0.76 -0.7
608,093 + 11309 mRNA_2941 0.78 -0.7
608,210 - 11309 mRNA_2941 0.89 +0.7
608,371 + -0.9
608,520 - -1.2
608,524 + -0.0
608,666 - 11310 mRNA_2942 0.23 -2.2
608,814 + 11310 mRNA_2942 0.37 -1.0
609,005 - 11310 mRNA_2942 0.55 -2.2
609,117 - 11310 mRNA_2942 0.65 -0.2
609,216 + 11310 mRNA_2942 0.75 -1.9
609,263 - 11310 mRNA_2942 0.79 +1.2
609,360 + 11310 mRNA_2942 0.88 -0.6
609,376 - 11310 mRNA_2942 0.90 -0.3
609,431 - -1.3
609,433 - +0.4
609,548 + +0.6
609,741 - -0.6
609,852 - -2.9
610,454 - 11311 mRNA_2943 0.20 -1.0

Or see this region's nucleotide sequence