Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2993

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11361 and 11362 are separated by 124 nucleotides mRNA_2993: 11361 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,SUPERFAMILY--SSF50685, at 29,624 to 29,993 11361 mRNA_2994: 11362 - K14729 FOX2 multifunctional beta-oxidation protein, at 30,118 to 34,295 11362

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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28,633 - +1.1
28,729 - -0.1
28,820 + +0.3
28,820 + -1.0
28,895 - +1.0
28,907 - -0.9
28,952 + -2.4
28,952 + -0.3
28,981 - -3.5
29,069 + -1.5
29,212 + -0.0
29,317 + +1.0
29,361 - -2.7
29,390 - +0.7
29,393 + -1.1
29,449 + +1.0
29,479 - -2.9
29,490 + -3.1
29,556 - +1.3
29,690 - 11361 mRNA_2993 0.18 -0.6
29,693 - 11361 mRNA_2993 0.19 +2.8
29,694 - 11361 mRNA_2993 0.19 -0.9
29,802 + 11361 mRNA_2993 0.48 +0.2
29,967 + -2.1
29,999 + -1.3
30,170 - -1.7
30,250 + -0.0
30,385 + +1.3
30,462 + -1.4
30,476 - -2.1
30,478 + +1.3
30,491 + -2.6
30,494 - -1.8
30,499 - -0.7
30,625 - 11362 mRNA_2994 0.12 -0.5
30,712 + 11362 mRNA_2994 0.14 -0.3
30,839 + 11362 mRNA_2994 0.17 +1.3
30,858 + 11362 mRNA_2994 0.18 -1.2
30,956 - 11362 mRNA_2994 0.20 -0.9

Or see this region's nucleotide sequence