Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3169

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11537 and 11538 are separated by 647 nucleotides mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1,526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2,174 to 3,237 11538

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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12 + -0.3
12 + -1.3
15 + +1.6
16 + +1.0
18 + -0.4
22 + -0.4
25 + +0.9
57 - -0.1
61 - +0.7
62 + -0.8
62 + +0.1
66 + -0.5
72 + +0.9
72 + -0.7
72 + -0.5
75 + +0.7
78 - +0.4
105 + -1.9
110 - -0.4
114 + +0.1
115 + +0.3
118 + -3.7
122 + -0.0
122 - +0.5
124 + -2.2
135 + -0.0
147 + +1.3
157 + -1.3
161 + +0.8
168 + +0.6
174 + +0.0
177 - -0.5
228 + +1.8
247 + +1.1
252 - -1.6
253 - -0.4
255 + +0.7
258 + -0.5
264 - -0.7
269 + -0.6
269 - +0.1
274 + +0.4
275 - +0.2
277 + +0.4
280 + +1.2
280 + -0.1
283 - +0.3
285 - +1.9
287 + -0.3
287 + -1.1
288 + +0.9
292 - -0.1
293 + +0.0
298 + -1.8
305 - +0.8
314 + +1.8
320 + +0.6
368 + +0.1
370 - -0.3
372 + -0.2
382 + -1.2
384 + +0.3
391 + -3.1
391 - -0.4
397 + -0.7
397 - -1.0
402 + -0.9
405 + +0.5
423 - -2.7
430 + -1.3
440 + -0.6
446 + -0.3
470 + +2.3
524 + +0.7
532 + -0.7
545 - -1.2
557 + +0.3
569 + -0.6
570 - -1.0
583 + +1.1
584 + +0.1
603 - -0.6
603 + +2.4
634 - 11537 mRNA_3169 0.11 -1.5
636 + 11537 mRNA_3169 0.11 -2.4
646 + 11537 mRNA_3169 0.12 +0.0
661 + 11537 mRNA_3169 0.13 -0.5
667 + 11537 mRNA_3169 0.14 -0.2
698 + 11537 mRNA_3169 0.17 -0.3
704 - 11537 mRNA_3169 0.18 +1.1
705 - 11537 mRNA_3169 0.18 -0.5
721 - 11537 mRNA_3169 0.19 +0.0
725 + 11537 mRNA_3169 0.20 -1.2
738 - 11537 mRNA_3169 0.21 +0.0
849 + 11537 mRNA_3169 0.32 +1.8
871 + 11537 mRNA_3169 0.34 -1.0
883 + 11537 mRNA_3169 0.35 -0.3
894 + 11537 mRNA_3169 0.37 +0.4
895 + 11537 mRNA_3169 0.37 +1.5
922 + 11537 mRNA_3169 0.39 -0.3
965 - 11537 mRNA_3169 0.44 -2.9
1,012 - 11537 mRNA_3169 0.48 +0.3
1,026 + 11537 mRNA_3169 0.50 -0.7
1,026 + 11537 mRNA_3169 0.50 -1.7
1,105 + 11537 mRNA_3169 0.58 +1.3
1,123 + 11537 mRNA_3169 0.60 -1.4
1,141 + 11537 mRNA_3169 0.61 +3.4
1,142 + 11537 mRNA_3169 0.61 -0.3
1,165 + 11537 mRNA_3169 0.64 +0.9
1,174 - 11537 mRNA_3169 0.65 -1.0
1,174 + 11537 mRNA_3169 0.65 -0.7
1,259 + 11537 mRNA_3169 0.73 +1.3
1,265 + 11537 mRNA_3169 0.74 -0.2
1,268 + 11537 mRNA_3169 0.74 +0.0
1,269 - 11537 mRNA_3169 0.74 -0.1
1,288 - 11537 mRNA_3169 0.76 +0.7
1,297 + 11537 mRNA_3169 0.77 -0.7
1,303 - 11537 mRNA_3169 0.78 +0.3
1,399 + 11537 mRNA_3169 0.87 +0.5
1,412 - 11537 mRNA_3169 0.88 -0.5
1,419 - 11537 mRNA_3169 0.89 -0.3
1,423 - 11537 mRNA_3169 0.90 -0.6
1,429 - -0.9
1,453 + +1.2
1,459 + -0.8
1,459 + +0.5
1,460 - -0.4
1,461 + +0.1
1,462 + +1.5
1,467 + -0.9
1,470 - -0.4
1,474 - +0.2
1,485 + -1.7
1,520 + +1.1
1,523 + +0.6
1,531 - -1.4
1,537 + -0.7
1,541 + -0.0
1,562 + -0.9
1,567 + +0.5
1,572 + +0.3
1,582 - -0.3
1,584 - +3.2
1,589 + -1.1
1,596 - +0.6
1,601 - -0.8
1,602 + -0.2
1,605 + +1.9
1,609 + -0.2
1,616 + -0.1
1,636 + +0.8
1,654 + +0.4
1,656 - -0.9
1,666 + +0.0
1,675 - +1.5
1,682 - -0.9
1,697 - +0.9
1,709 + +0.8
1,709 - -0.5
1,711 + +0.4
1,718 - -0.9
1,719 + +0.3
1,722 - +0.3
1,723 + -0.3
1,725 - -0.4
1,725 - -1.8
1,727 + -1.3
1,730 + +0.3
1,731 + +0.4
1,732 + -1.2
1,732 + -1.9
1,734 + +2.0
1,734 + -0.2
1,734 + -0.1
1,739 - +0.5
1,740 + +0.3
1,744 - -0.2
1,747 + -0.2
1,749 + -1.9
1,759 + -0.4
1,759 + -0.7
1,759 + +0.9
1,761 + -0.5
1,763 + -2.2
1,765 + +1.8
1,767 + +0.6
1,769 + +0.1
1,772 + +1.4
1,772 + -1.6
1,774 + -0.7
1,774 + +0.7
1,775 + -1.3
1,776 - -1.1
1,776 + -0.8
1,777 + -0.9
1,778 + -0.2
1,778 - +1.0
1,781 - +1.3
1,783 - +0.2
1,783 - +1.0
1,783 - -0.6
1,783 - -1.0
1,784 + +0.2
1,789 + +0.4
1,789 - +0.9
1,791 + -0.6
1,792 + +1.3
1,793 + +0.3
1,795 + -0.1
1,796 + -0.8
1,796 - -1.1
1,798 + +0.3
1,800 + +0.4
1,801 + -0.9
1,805 + +0.1
1,805 + -0.9
1,807 + +0.0
1,813 - -1.6
1,814 + -0.5
1,814 + -0.2
1,818 - +0.6
1,851 - -0.8
1,874 + -0.6
1,881 - +0.3
1,885 - -1.1
1,891 - +1.3
1,896 - +0.1
1,912 + -1.3
1,912 + +0.2
1,914 - -1.3
1,916 - -1.0
1,917 - -1.1
1,919 + -1.2
1,922 - +0.6
1,923 - -0.1
1,934 - -0.7
1,935 + -0.7
1,938 - -0.7
1,938 - +0.2
1,940 - -2.0
1,941 + +1.3
1,941 + -1.5
1,942 + -1.2
1,943 - +0.3
1,944 + +0.3
1,944 - +0.4
1,945 - +0.7
1,945 + +0.6
1,946 - -0.5
1,947 + -0.4
1,960 - +0.3
1,968 + -0.5
1,980 + -3.1
2,015 + +0.0
2,067 - +0.8
2,081 - +0.1
2,091 + -0.3
2,220 + -0.7
2,229 - -0.7
2,235 - +0.3
2,237 - -0.2
2,242 + -2.5
2,242 - -0.3
2,245 - +1.1
2,248 - +1.8
2,251 + -0.4
2,254 - +1.0
2,261 + +1.1
2,262 - -0.2
2,266 + -2.0
2,268 + +0.9
2,400 + 11538 mRNA_3170 0.21 +0.2
2,401 - 11538 mRNA_3170 0.21 +0.1
2,404 + 11538 mRNA_3170 0.22 +0.3
2,414 + 11538 mRNA_3170 0.23 -0.6
2,420 - 11538 mRNA_3170 0.23 -0.9
2,439 + 11538 mRNA_3170 0.25 -1.9
2,446 + 11538 mRNA_3170 0.26 +0.9
2,470 - 11538 mRNA_3170 0.28 -0.7
2,516 - 11538 mRNA_3170 0.32 +0.9

Or see this region's nucleotide sequence