Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3220

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11587 and 11588 are separated by 192 nucleotides mRNA_3219: 11587 - HMMPfam-RNase H-PF00075,ProSiteProfiles-RNase H domain profile.-PS50879,SUPERFAMILY--SSF53098, at 125,577 to 131,824 11587 mRNA_3220: 11588 - KOG0686 COP9 signalosome, subunit CSN1, at 132,017 to 133,130 11588

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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131,128 - 11587 mRNA_3219 0.89 +0.1
131,459 - +0.3
131,602 - -0.9
131,964 + -2.0
132,026 - +0.7
132,346 - 11588 mRNA_3220 0.30 +1.0
132,384 - 11588 mRNA_3220 0.33 -2.4
132,395 - 11588 mRNA_3220 0.34 -1.2
133,039 + +1.5
133,203 - +0.2
133,682 + -2.1
133,888 - -0.7

Or see this region's nucleotide sequence