Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3227

Experiment: Sorted Low BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11595 and 11596 are separated by 421 nucleotides mRNA_3227: 11595 - K12854 SNRNP200, BRR2 pre-mRNA-splicing helicase BRR2, at 143,143 to 150,132 11595 mRNA_3228: 11596 - Hypothetical Protein, at 150,554 to 152,280 11596

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
remove
142,331 + -2.0
142,333 - -2.5
142,628 + +0.0
142,774 + -2.3
142,776 - -0.6
142,781 + -0.0
142,793 - +0.1
142,809 + +0.4
142,833 + -1.3
142,950 - +1.8
149,362 + 11595 mRNA_3227 0.89 +0.3
150,642 + +0.3
150,682 + +1.1
150,721 + +0.0
150,806 + 11596 mRNA_3228 0.15 -1.7
150,824 + 11596 mRNA_3228 0.16 +0.1
150,847 - 11596 mRNA_3228 0.17 -0.4
150,860 + 11596 mRNA_3228 0.18 +0.1
150,894 + 11596 mRNA_3228 0.20 -0.1
151,015 + 11596 mRNA_3228 0.27 +0.6
151,122 - 11596 mRNA_3228 0.33 -2.9

Or see this region's nucleotide sequence