Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3324

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11691 and 11692 are separated by 407 nucleotides11692 and 11693 are separated by 176 nucleotides mRNA_3323: 11691 - HMMPfam-RTA1 like protein-PF04479, at 395,494 to 396,830 11691 mRNA_3324: 11692 - HMMPfam-RTA1 like protein-PF04479, at 397,238 to 398,541 11692 mRNA_3325: 11693 - Hypothetical Protein, at 398,718 to 399,832 11693

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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396,275 - 11691 mRNA_3323 0.58 +0.7
396,446 + 11691 mRNA_3323 0.71 -0.2
396,581 + 11691 mRNA_3323 0.81 +0.6
396,998 + -1.7
397,010 - -0.2
397,011 - +1.1
397,052 + -0.9
397,151 - +0.0
397,170 - -1.9
397,173 + +1.4
397,182 - -0.2
397,196 + -0.7
397,296 - -2.5
397,723 - 11692 mRNA_3324 0.37 -0.2
398,171 - 11692 mRNA_3324 0.72 +0.6
398,741 - -0.6
398,864 - 11693 mRNA_3325 0.13 -0.3
398,894 + 11693 mRNA_3325 0.16 +1.2

Or see this region's nucleotide sequence