Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3344

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11711 and 11712 are separated by 548 nucleotides11712 and 11713 are separated by 861 nucleotides mRNA_3343: 11711 - HMMPfam-alpha/beta hydrolase fold-PF07859,SUPERFAMILY--SSF53474, at 433,717 to 434,732 11711 mRNA_3344: 11712 - Hypothetical Protein, at 435,281 to 435,909 11712 mRNA_3345: 11713 - Hypothetical Protein, at 436,771 to 439,819 11713

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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434,344 - 11711 mRNA_3343 0.62 +1.2
434,349 - 11711 mRNA_3343 0.62 -1.2
434,435 + 11711 mRNA_3343 0.71 -0.9
434,470 - 11711 mRNA_3343 0.74 -0.6
434,627 + 11711 mRNA_3343 0.90 -0.2
434,627 + 11711 mRNA_3343 0.90 -0.2
434,637 + -1.7
434,637 + -1.5
434,642 - +1.0
434,653 + +0.1
434,758 - +1.4
434,771 - +3.7
434,771 - -0.6
434,780 - -0.7
434,788 - -0.2
434,788 + +0.2
434,793 - -1.7
434,793 - +0.8
434,794 - +0.2
434,795 - -1.3
434,797 - -0.5
434,798 - +0.1
434,801 + -0.1
434,806 - -0.6
434,806 - -0.9
434,808 - -1.3
434,810 + +0.8
434,810 - +0.6
434,810 - -1.6
434,811 - -1.1
434,811 - +0.2
434,811 - +0.5
434,814 + -0.2
434,818 - -1.3
434,818 + +0.3
434,820 - +0.1
434,825 + -1.2
434,826 + -0.2
434,835 - -0.7
434,836 + -2.1
434,838 + -0.1
434,839 - -1.1
434,846 + -0.2
434,847 + -1.4
434,851 + -0.8
434,859 + -1.7
434,861 + +0.4
434,862 - -1.2
434,864 + -0.9
434,864 + -1.0
434,901 - -1.8
434,915 - -1.0
434,932 - +1.9
434,933 + +0.3
434,936 + +0.5
434,965 - +1.2
434,968 - +0.2
434,972 - +0.0
434,980 + +2.3
434,982 + +0.8
434,985 - -0.7
434,989 + +0.7
434,994 - +1.4
435,007 - -0.2
435,007 + -0.2
435,008 - +0.5
435,009 + +0.7
435,009 - -0.0
435,014 - +2.1
435,017 - -2.1
435,021 - -1.3
435,022 + -0.1
435,022 + +0.0
435,022 + -1.0
435,022 + -0.9
435,031 - -0.1
435,037 + -0.2
435,039 - -1.8
435,041 - -1.6
435,043 + -0.4
435,044 + +0.7
435,055 + -0.2
435,056 - -0.0
435,057 + +0.1
435,062 - +0.0
435,062 - +0.3
435,067 - -0.1
435,068 - -1.6
435,072 - +0.3
435,077 - -0.5
435,084 - +0.1
435,089 + +0.9
435,092 - +1.0
435,101 + +1.6
435,105 + +0.7
435,184 + +1.3
435,188 - -0.3
435,214 + -0.0
435,218 + -2.7
435,242 + -0.5
435,254 - +0.4
435,270 + +0.9
435,366 - 11712 mRNA_3344 0.14 -1.8
435,367 + 11712 mRNA_3344 0.14 +0.6
435,386 - 11712 mRNA_3344 0.17 +1.4
435,413 + 11712 mRNA_3344 0.21 +0.5
435,415 - 11712 mRNA_3344 0.21 +0.5
435,425 + 11712 mRNA_3344 0.23 +0.8
435,444 + 11712 mRNA_3344 0.26 +0.5
435,480 - 11712 mRNA_3344 0.32 +0.1
435,551 - 11712 mRNA_3344 0.43 -0.8
435,558 + 11712 mRNA_3344 0.44 +0.0
435,687 + 11712 mRNA_3344 0.65 +0.3
435,708 - 11712 mRNA_3344 0.68 -0.6
435,942 - +0.2
436,000 + +0.1
436,006 - -0.9
436,024 - -0.3
436,030 + -1.7
436,100 - -2.1
436,112 + +1.8
436,114 - -0.5
436,130 - -1.3
436,132 - +1.2
436,179 + +1.2
436,179 - +0.8
436,180 + +2.2
436,202 - +1.0
436,212 - +0.1
436,229 - +0.4
436,235 + -1.2
436,238 + -0.7
436,240 + +0.1
436,240 + -0.2
436,242 - +0.4
436,242 - -0.1
436,242 - -1.0
436,250 + -0.1
436,250 + -1.7
436,272 + -0.3
436,275 + -0.8
436,278 + +1.2
436,288 + +0.1
436,297 - +0.5
436,303 + +0.6
436,320 + -0.6
436,321 - -0.7
436,325 + -0.7
436,329 + +0.5
436,332 - +0.6
436,332 - -0.5
436,339 - -0.7
436,342 - -0.8
436,356 - +0.7
436,358 + -0.3
436,457 - -0.0
436,458 - -0.4
436,460 + +1.2
436,471 - +1.8
436,476 - +0.8
436,494 + -1.3
436,505 + -0.3
436,508 - -1.8
436,523 + -1.0
436,526 + -0.2
436,530 - +1.1
436,532 + -0.3
436,557 + -0.3
436,674 + -1.8
436,689 - -0.6
436,787 - -0.2
436,816 + +0.0
436,839 + -2.8
436,841 + -0.1
436,875 + +0.0

Or see this region's nucleotide sequence