Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3354

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11721 and 11722 are separated by 214 nucleotides11722 and 11723 are separated by 649 nucleotides mRNA_3353: 11721 - K10352 MYH myosin heavy chain, at 471,874 to 478,185 11721 mRNA_3354: 11722 - KOG2395 Protein involved in vacuole import and degradation, at 478,400 to 482,104 11722 mRNA_3355: 11723 - K01126 E3.1.4.46, glpQ, ugpQ glycerophosphoryl diester phosphodiesterase, at 482,754 to 484,525 11723

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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477,527 - 11721 mRNA_3353 0.90 -0.4
477,644 - -2.1
478,211 - +0.4
478,226 + -2.2
478,228 - -2.9
478,233 + -1.8
478,369 + -1.1
478,784 + 11722 mRNA_3354 0.10 -1.7
479,232 - 11722 mRNA_3354 0.22 +1.1
480,763 + 11722 mRNA_3354 0.64 +0.5
481,501 + 11722 mRNA_3354 0.84 -0.4
482,222 - +0.9
482,367 + -1.4
482,380 + +1.4
482,395 - -1.1
482,395 + -0.7
482,405 + -1.1
482,409 - +1.0
482,409 - +0.1
482,422 + +0.2
482,552 + -2.3
482,560 + +1.0
482,565 + -0.4
482,571 - -2.4
482,571 - -0.1
482,585 - +0.8
482,719 - +2.5
482,735 + -0.2
482,866 - -0.2
482,870 - +1.2
482,874 + +0.5
482,900 - -0.2
483,022 - 11723 mRNA_3355 0.15 -1.1
483,025 - 11723 mRNA_3355 0.15 -0.7
483,027 - 11723 mRNA_3355 0.15 -0.3
483,042 + 11723 mRNA_3355 0.16 +0.0
483,042 - 11723 mRNA_3355 0.16 +0.9
483,065 - 11723 mRNA_3355 0.18 -0.3

Or see this region's nucleotide sequence