Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3419

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11787 and 11788 are separated by 390 nucleotides mRNA_3419: 11787 - K01120 cpdP 3',5'-cyclic-nucleotide phosphodiesterase, at 50,010 to 53,314 11787 mRNA_3420: 11788 - HMMPfam-ATP dependent DNA ligase domain-PF01068,HMMPfam-DNA ligase N terminus-PF04675,ProSiteProfiles-ATP-dependent DNA ligase family profile.-PS50160,SUPERFAMILY--SSF56091, at 53,705 to 57,912 11788

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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49,097 - +2.0
49,103 + +1.5
49,180 + -1.2
49,194 - -2.8
49,195 + -0.2
49,214 + -1.1
49,325 - -2.7
49,349 - -1.4
49,371 + -3.6
49,372 + +1.5
49,376 - -1.4
49,376 - +0.4
49,378 - +0.5
49,378 - -1.1
49,379 - -1.7
49,384 + +0.8
49,387 + +0.0
49,393 - +0.3
49,396 - +0.1
49,398 + -1.7
49,400 + -1.2
49,402 + -0.8
49,406 + +0.5
49,407 + +0.3
49,409 + -1.7
49,409 + -0.2
49,420 - -2.1
49,472 - -0.1
49,496 - -1.8
49,503 - -1.5
49,505 + +0.2
49,505 + +0.2
49,508 - -1.0
49,524 + +0.5
49,527 + +0.1
49,532 - +0.1
49,534 - -0.4
49,574 + -1.8
49,582 + +0.8
49,605 + -0.9
49,610 + -2.7
49,626 - +0.8
49,626 - -0.6
49,627 - +0.3
49,627 - -1.6
49,629 + +0.4
49,638 - +0.1
49,644 + +1.0
49,663 + -0.1
49,736 - -1.8
49,754 - +1.0
49,766 - +0.2
49,776 + -0.8
49,777 - -0.3
49,784 - -1.2
49,803 - +0.7
49,926 + -0.4
49,933 + +0.7
49,935 - +0.5
49,943 + +0.2
50,075 - -2.7
50,081 - -1.7
50,084 + -1.9
50,089 + +0.3
50,116 + -1.7
50,240 + -1.0
50,240 - -0.4
50,241 + -1.3
50,247 + -4.4
50,269 - -1.1
50,273 - -1.5
50,417 + 11787 mRNA_3419 0.12 +1.4
50,555 + 11787 mRNA_3419 0.16 -2.0
50,701 + 11787 mRNA_3419 0.21 -1.9
50,973 + 11787 mRNA_3419 0.29 -1.6
50,982 - 11787 mRNA_3419 0.29 -2.6
51,462 - 11787 mRNA_3419 0.44 -2.6
52,264 - 11787 mRNA_3419 0.68 -3.6
52,421 - 11787 mRNA_3419 0.73 -3.0
52,581 - 11787 mRNA_3419 0.78 -0.5
52,610 - 11787 mRNA_3419 0.79 -0.7
52,981 - 11787 mRNA_3419 0.90 +1.0
53,417 - -0.0
53,602 - -0.2
53,604 - +1.0
53,609 + -0.3
53,615 - -0.7
53,615 - +0.1
53,616 - +0.4
53,624 + +1.1

Or see this region's nucleotide sequence