Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3472

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11839 and 11840 are separated by 528 nucleotides11840 and 11841 are separated by 356 nucleotides mRNA_3471: 11839 - Interpro Transcription-silencing protein, cryptic loci regulator Clr2 Transcription-silencing protein Clr2, at 181,846 to 184,835 11839 mRNA_3472: 11840 - HMMPfam-Xylose isomerase-like TIM barrel-PF01261,SUPERFAMILY--SSF51658, at 185,364 to 186,603 11840 mRNA_3473: 11841 - K11578 ZW10, DSL1 protein transport protein DSL1/ZW10, at 186,960 to 196,280 11841

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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184,391 - 11839 mRNA_3471 0.85 -0.1
184,488 + 11839 mRNA_3471 0.88 -3.6
184,662 + +0.8
184,825 + -0.6
184,964 + -2.3
185,262 - +0.2
185,542 + 11840 mRNA_3472 0.14 +0.2
185,573 + 11840 mRNA_3472 0.17 -0.9
185,689 + 11840 mRNA_3472 0.26 +1.0
185,693 - 11840 mRNA_3472 0.27 -1.1
185,829 + 11840 mRNA_3472 0.38 +0.5
186,432 - 11840 mRNA_3472 0.86 -0.0
186,527 - -0.8
186,561 - +1.5
186,571 + +0.4
186,575 - -0.3
186,578 + -0.3
186,581 - -0.7
186,587 + -1.2
186,710 + -1.9
186,735 - -2.5

Or see this region's nucleotide sequence