Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3489

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11857 and 11858 are separated by 208 nucleotides mRNA_3489: 11857 - BLAST NADH-ubiquinone oxidoreductase, 17.2kDa subunit [..., at 226,345 to 227,373 11857 mRNA_3490: 11858 - K05236 COPA, RET1 coatomer subunit alpha, at 227,582 to 231,954 11858

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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225,354 + -1.5
225,572 - -0.9
225,757 + -3.3
225,774 + -1.4
225,876 + -0.8
226,021 + +0.1
226,035 - -1.4
226,038 - -0.2
226,041 + -1.1
226,150 - -1.8
226,155 - +0.1
226,186 + -0.5
226,283 + -0.6
226,289 - +0.5
226,311 - -0.2
226,316 + +0.2
226,321 + -0.4
226,349 + -0.4
226,368 - -1.1
226,460 + 11857 mRNA_3489 0.11 -0.2
227,337 - -0.9
227,355 + -0.1
227,371 + -0.1
227,558 + -0.5

Or see this region's nucleotide sequence