Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3589

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11956 and 11957 are separated by 485 nucleotides mRNA_3588: 11956 - KOG0254 Predicted transporter (major facilitator superfamily), at 113,212 to 115,744 11956 mRNA_3589: 11957 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF101908,SUPERFAMILY--SSF81383, at 116,230 to 117,801 11957

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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115,790 - -4.0
116,215 + -1.7
116,230 - +0.3
116,234 + -0.4
116,372 + -0.2
117,133 + 11957 mRNA_3589 0.57 -1.0
117,270 + 11957 mRNA_3589 0.66 -1.6
117,308 - 11957 mRNA_3589 0.69 -1.1
117,377 - 11957 mRNA_3589 0.73 -1.1
117,448 - 11957 mRNA_3589 0.77 +0.5
117,686 - -0.6
117,689 + -0.7
117,693 - -0.8
117,838 + -0.4
117,855 + -2.0
118,129 - -1.6
118,140 + -0.3
118,261 + -0.7
118,287 + +1.2
118,420 + -1.0
118,570 + -1.1
118,732 - -1.4
118,736 + -0.7
118,743 + -0.0
118,745 - -0.8
118,746 - +0.5
118,746 + +0.0
118,747 - +0.1
118,749 + +0.1
118,753 - -1.3
118,753 + -0.1

Or see this region's nucleotide sequence