Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3598

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11966 and 11967 are separated by 217 nucleotides mRNA_3598: 11966 - KOG2652 RNA polymerase II transcription initiation factor TFIIA, large chain, at 137,259 to 138,295 11966 mRNA_3599: 11967 - K02134 ATPeF1D, ATP5D, ATP16 F-type H+-transporting ATPase subunit delta, at 138,513 to 139,861 11967

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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136,339 - -2.0
136,776 - +0.8
136,802 - +0.4
136,938 - -0.2
137,107 + +0.7
138,385 - +0.4
138,388 + -0.5
138,415 + +0.9
138,441 - -2.0
138,445 + +0.4
138,446 + +0.1
138,449 + -0.5
138,450 - -1.4
138,451 + -0.1
138,454 - -0.2
138,457 - -0.8
138,465 - -3.0
138,465 + +0.1
138,471 + -0.5
138,473 + +0.3
138,476 + -1.3
138,477 + -1.3

Or see this region's nucleotide sequence