Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3620

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11987 and 11988 are separated by 306 nucleotides11988 and 11989 are separated by 183 nucleotides mRNA_3619: 11987 - HMMPfam-X-Pro dipeptidyl-peptidase (S15 family)-PF02129,HMMPfam-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-PF08530,SMART-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-SM00939,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF53474,TIGRFAM-/NonD hydrolase CocE/NonD family protein-TIGR00976, at 179,234 to 181,455 11987 mRNA_3620: 11988 - K15777 DOPA 4,5-DOPA dioxygenase extradiol, at 181,762 to 183,020 11988 mRNA_3621: 11989 - K00252 GCDH, gcdH glutaryl-CoA dehydrogenase, at 183,204 to 185,483 11989

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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180,795 - 11987 mRNA_3619 0.70 -1.2
180,881 - 11987 mRNA_3619 0.74 -1.1
180,929 + 11987 mRNA_3619 0.76 -3.4
180,989 + 11987 mRNA_3619 0.79 -1.4
181,365 - +0.4
181,579 + -0.2
181,613 - +0.8
181,615 - -0.6
181,621 - -1.5
181,627 + -1.8
181,656 - -3.2
181,685 - +1.1
181,687 - -2.2
181,695 + -0.8
181,698 - +2.0
181,701 - +0.9
181,711 + +1.0
181,853 - +0.2
182,001 + 11988 mRNA_3620 0.19 -0.6
182,026 + 11988 mRNA_3620 0.21 +0.2
182,114 + 11988 mRNA_3620 0.28 +0.4
182,441 - 11988 mRNA_3620 0.54 -1.2
182,732 - 11988 mRNA_3620 0.77 -0.3
182,749 + 11988 mRNA_3620 0.78 -3.3
183,188 - -0.7

Or see this region's nucleotide sequence