Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3681

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12048 and 12049 are separated by 139 nucleotides12049 and 12050 are separated by 815 nucleotides mRNA_3680: 12048 - Hypothetical Protein, at 328,001 to 330,038 12048 mRNA_3681: 12049 - Hypothetical Protein, at 330,178 to 331,991 12049 mRNA_3682: 12050 - K07203 MTOR, FRAP, TOR serine/threonine-protein kinase mTOR, at 332,807 to 341,262 12050

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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329,859 - -1.8
330,375 - 12049 mRNA_3681 0.11 -0.8
330,382 + 12049 mRNA_3681 0.11 -3.1
331,153 - 12049 mRNA_3681 0.54 -0.1
331,167 - 12049 mRNA_3681 0.55 -0.5
331,752 - 12049 mRNA_3681 0.87 +1.5
331,753 - 12049 mRNA_3681 0.87 -0.5
332,050 - +0.9
332,079 + +0.5

Or see this region's nucleotide sequence