Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3761

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12128 and 12129 are separated by 295 nucleotides12129 and 12130 are separated by 413 nucleotides mRNA_3760: 12128 - K10746 EXO1 exonuclease 1, at 521,061 to 522,364 12128 mRNA_3761: 12129 - K20520 DBNL, ABP1 drebrin-like protein, at 522,660 to 525,046 12129 mRNA_3762: 12130 - Hypothetical Protein, at 525,460 to 525,822 12130

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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521,800 + 12128 mRNA_3760 0.57 -1.6
521,862 - 12128 mRNA_3760 0.61 -4.2
522,152 + 12128 mRNA_3760 0.84 -0.3
522,257 - +0.9
522,575 + -1.2
522,594 + -0.7
522,732 - +0.1
522,868 - -2.3
522,884 + +0.3
523,214 - 12129 mRNA_3761 0.23 +0.3
523,594 - 12129 mRNA_3761 0.39 -0.3
524,205 - 12129 mRNA_3761 0.65 -0.4
524,464 - 12129 mRNA_3761 0.76 +0.3
524,782 + 12129 mRNA_3761 0.89 -2.2
524,913 - -0.1
524,933 + +1.0
524,934 + +0.6
524,945 + -0.3
525,083 - -2.0
525,088 + -0.3
525,171 - +1.3
525,252 - -0.3
525,269 + -2.1
525,377 + -0.6
525,566 + 12130 mRNA_3762 0.29 -0.9
525,844 + +1.0
525,949 - -1.7

Or see this region's nucleotide sequence