Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3781

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12149 and 12150 are separated by 353 nucleotides mRNA_3781: 12149 - K12821 PRPF40, PRP40 pre-mRNA-processing factor 40, at 565,558 to 568,249 12149 mRNA_3782: 12150 - K04354 PPP2R2 serine/threonine-protein phosphatase 2A regulatory subunit B, at 568,603 to 571,218 12150

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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564,642 - -0.0
564,762 + -0.5
565,145 + -0.1
565,147 - +0.6
565,418 + +0.4
565,424 + +0.2
565,723 - -2.6
565,848 - 12149 mRNA_3781 0.11 -0.0
565,855 + 12149 mRNA_3781 0.11 +0.4
565,992 + 12149 mRNA_3781 0.16 -0.2
566,025 + 12149 mRNA_3781 0.17 +1.0
566,494 - 12149 mRNA_3781 0.35 -1.1
566,755 + 12149 mRNA_3781 0.44 -0.5
567,303 - 12149 mRNA_3781 0.65 -0.4
567,481 + 12149 mRNA_3781 0.71 -2.3
567,772 + 12149 mRNA_3781 0.82 -0.4
568,071 - +0.7
568,201 + -0.3
568,201 - -0.6
568,331 - +0.1
568,340 - +0.3
568,351 - +0.4
568,362 - -0.3
568,368 + -0.2
568,378 + +1.7
568,386 - -0.4
568,500 - -0.0

Or see this region's nucleotide sequence