Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3919

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12286 and 12287 are separated by 518 nucleotides12287 and 12288 are separated by 330 nucleotides mRNA_3918: 12286 - KOG0024 Sorbitol dehydrogenase, at 895,186 to 897,368 12286 mRNA_3919: 12287 - KOG4020 Protein DRE2, required for cell viability, at 897,887 to 899,209 12287 mRNA_3920: 12288 - K12767 RIM15 serine/threonine-protein kinase RIM15, at 899,540 to 908,734 12288

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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897,097 + 12286 mRNA_3918 0.88 -1.6
897,307 - +0.3
897,412 - -0.0
897,415 + +2.0
897,423 + -1.9
897,447 + -2.0
897,545 + -1.9
897,557 + -0.3
897,567 + +1.0
897,602 + -2.5
897,632 - -1.1
897,642 - +0.0
897,642 + -0.5
897,646 + +0.7
897,661 + -0.5
897,675 + -0.7
897,682 - -0.9
897,724 - +0.3
897,725 + +0.9
897,738 + -0.0
897,751 + -1.4
897,754 - -1.6
897,774 + +0.4
897,907 + +0.8
899,255 + +0.0
899,289 + -1.8
899,293 + -0.1
899,400 + -4.0
899,426 + -0.8
900,000 + -2.4
900,153 - -2.0
900,160 - +0.7

Or see this region's nucleotide sequence