Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3986

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12353 and 12354 are separated by 285 nucleotides mRNA_3985: 12353 - K03448 FEN2, LIZ1 MFS transporter, ACS family, pantothenate transporter, at 1,076,249 to 1,078,580 12353 mRNA_3986: 12354 - K01439 dapE succinyl-diaminopimelate desuccinylase, at 1,078,866 to 1,080,824 12354

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,078,703 + -0.9
1,078,721 + +1.3
1,078,721 - -0.7
1,078,739 + +0.9
1,078,744 + -0.9
1,078,748 + +3.6
1,078,846 - +1.4
1,078,854 - -0.0
1,078,856 + +1.6
1,078,878 - -2.4
1,078,883 - +0.1
1,078,897 + +0.2
1,078,911 - -0.0
1,078,914 + -0.3
1,078,915 - +1.3
1,079,090 + 12354 mRNA_3986 0.11 +0.6
1,079,323 + 12354 mRNA_3986 0.23 -2.0
1,079,749 + 12354 mRNA_3986 0.45 -1.5
1,080,257 + 12354 mRNA_3986 0.71 -3.8
1,080,331 + 12354 mRNA_3986 0.75 +1.5
1,080,454 - 12354 mRNA_3986 0.81 -1.9
1,080,727 + -0.3
1,081,506 - +0.0
1,081,512 + -5.4
1,081,516 + -2.1
1,081,517 + +0.6
1,081,523 + -0.0
1,081,813 + -1.8
1,081,814 + -0.2
1,081,819 + -0.8

Or see this region's nucleotide sequence