Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3999

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12366 and 12367 are separated by 610 nucleotides mRNA_3998: 12366 - HMMPfam-bZIP transcription factor-PF00170,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 1,110,088 to 1,111,091 12366 mRNA_3999: 12367 - KOG1341 Na+/K+ transporter, at 1,111,702 to 1,115,806 12367

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,111,004 + -1.5
1,111,079 + -1.3
1,112,046 - +0.3
1,112,216 - 12367 mRNA_3999 0.13 +1.4
1,112,752 - 12367 mRNA_3999 0.26 -2.2
1,112,780 + 12367 mRNA_3999 0.26 +0.2
1,113,645 - 12367 mRNA_3999 0.47 -1.1
1,113,669 + 12367 mRNA_3999 0.48 +0.4
1,113,840 - 12367 mRNA_3999 0.52 +0.3
1,113,966 - 12367 mRNA_3999 0.55 +1.0
1,114,537 + 12367 mRNA_3999 0.69 +1.7
1,114,835 - 12367 mRNA_3999 0.76 +0.2
1,114,850 + 12367 mRNA_3999 0.77 +0.9
1,115,226 - 12367 mRNA_3999 0.86 +0.7
1,115,547 - -1.7
1,115,846 - -0.9
1,115,968 - +0.7
1,115,983 - -4.1
1,116,129 - -0.2
1,116,311 + -2.5
1,116,314 + -1.0
1,116,314 - -1.1
1,116,314 + -1.6
1,116,321 - +1.9
1,116,446 + -0.2
1,116,448 + -0.7
1,116,586 + +0.5
1,116,592 + +1.4
1,116,603 + -0.4

Or see this region's nucleotide sequence