Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4030

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12397 and 12398 are separated by 451 nucleotides12398 and 12399 are separated by 466 nucleotides mRNA_4029: 12397 - HMMPfam-DASH complex subunit Hsk3 like-PF08227, at 1,192,597 to 1,192,970 12397 mRNA_4030: 12398 - Hypothetical Protein, at 1,193,422 to 1,193,864 12398 mRNA_4031: 12399 - K08726 EPHX2 soluble epoxide hydrolase / lipid-phosphate phosphatase, at 1,194,331 to 1,195,759 12399

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,192,535 - +0.4
1,192,550 - -1.1
1,192,970 + +0.0
1,193,096 - +1.0
1,193,116 - -3.2
1,193,519 - 12398 mRNA_4030 0.22 +0.7
1,193,969 + -0.4
1,193,979 + +0.4
1,193,990 + -1.8
1,194,035 - +0.0
1,194,113 - -0.0
1,194,135 - -0.4
1,194,161 + -0.5
1,194,270 + +1.7
1,194,301 + +0.2
1,194,430 + -2.0
1,194,542 - 12399 mRNA_4031 0.15 +0.2
1,194,578 - 12399 mRNA_4031 0.17 -2.1
1,194,608 - 12399 mRNA_4031 0.19 -0.3
1,194,726 - 12399 mRNA_4031 0.28 +0.6

Or see this region's nucleotide sequence