Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4058

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12425 and 12426 are separated by 834 nucleotides12426 and 12427 are separated by 329 nucleotides mRNA_4057: 12425 - Hypothetical Protein, at 1,252,817 to 1,253,970 12425 mRNA_4058: 12426 - HMMPfam-Transcription factor Pcc1-PF09341, at 1,254,805 to 1,255,288 12426 mRNA_4059: 12427 - Hypothetical Protein, at 1,255,618 to 1,257,004 12427

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,253,868 + -0.8
1,253,878 - -1.3
1,253,907 - -1.1
1,254,021 - -1.6
1,254,025 + -0.2
1,254,180 - +0.9
1,254,180 - +0.3
1,254,183 + +0.5
1,254,187 + -1.9
1,254,217 - -1.2
1,254,305 - -0.3
1,254,308 + -0.9
1,254,352 + -1.2
1,254,352 - -0.7
1,254,359 + +0.3
1,254,474 + +0.5
1,254,478 - +0.8
1,254,483 - -2.1
1,254,491 - -0.0
1,254,492 - -0.9
1,254,493 - +0.1
1,254,500 + -0.7
1,254,503 + +3.7
1,254,506 - -0.5
1,254,529 - -2.5
1,254,543 - +0.1
1,254,553 + +0.3
1,254,554 + -0.5
1,254,554 + -0.1
1,254,629 + +0.7
1,254,640 + +0.4
1,254,642 + -1.1
1,254,740 + -0.8
1,254,740 + +0.1
1,254,741 + +0.3
1,254,742 - -0.2
1,254,769 + -0.4
1,254,775 + -2.3
1,255,331 - -0.6
1,255,399 + +0.1
1,255,486 + +0.4
1,255,499 + +1.0

Or see this region's nucleotide sequence