Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4073

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12441 and 12442 are separated by 307 nucleotides mRNA_4073: 12441 - KOG0961 Predicted Zn2+-dependent endopeptidase, insulinase superfamily, at 1,289,384 to 1,292,413 12441 mRNA_4074: 12442 - KOG0961 Predicted Zn2+-dependent endopeptidase, insulinase superfamily, at 1,292,721 to 1,296,857 12442

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,288,773 - -1.8
1,289,010 + +0.3
1,289,011 - +0.3
1,290,347 - 12441 mRNA_4073 0.32 -2.0
1,290,735 + 12441 mRNA_4073 0.45 -0.7
1,291,029 + 12441 mRNA_4073 0.54 -0.8
1,291,151 + 12441 mRNA_4073 0.58 -1.5
1,291,405 - 12441 mRNA_4073 0.67 -0.9
1,291,409 - 12441 mRNA_4073 0.67 -2.0
1,291,409 - 12441 mRNA_4073 0.67 -0.9
1,292,026 + 12441 mRNA_4073 0.87 -0.7
1,292,174 - +0.6
1,292,178 - -0.2
1,292,289 + -0.4
1,292,346 + +0.6
1,292,587 - -0.4
1,292,605 - -0.1
1,292,606 - -2.0
1,292,610 - -1.7
1,292,610 + -2.5
1,292,614 + +1.2
1,292,621 + -0.8
1,292,734 - -0.4
1,292,776 + -2.3
1,292,878 + -1.2
1,292,879 - -2.9
1,293,024 - -0.3
1,293,027 + -0.5

Or see this region's nucleotide sequence