Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4089

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12456 and 12457 are separated by 393 nucleotides12457 and 12458 are separated by 175 nucleotides mRNA_4088: 12456 - Hypothetical Protein, at 1,329,492 to 1,330,466 12456 mRNA_4089: 12457 - Hypothetical Protein, at 1,330,860 to 1,331,971 12457 mRNA_4090: 12458 - K18327 REXO4, REX4 RNA exonuclease 4, at 1,332,147 to 1,333,809 12458

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,329,873 - 12456 mRNA_4088 0.39 -1.9
1,329,977 + 12456 mRNA_4088 0.50 -2.9
1,330,044 + 12456 mRNA_4088 0.57 -0.1
1,330,047 - 12456 mRNA_4088 0.57 +0.8
1,330,161 - 12456 mRNA_4088 0.69 -0.4
1,330,164 + 12456 mRNA_4088 0.69 -0.4
1,330,582 - -0.3
1,330,588 + -0.4
1,331,454 - 12457 mRNA_4089 0.53 +0.7
1,331,585 + 12457 mRNA_4089 0.65 -0.4
1,331,593 - 12457 mRNA_4089 0.66 -1.8
1,331,792 + 12457 mRNA_4089 0.84 -0.8
1,331,847 + 12457 mRNA_4089 0.89 -0.9
1,331,923 - +0.8
1,331,925 + -1.1
1,332,035 + +0.2
1,332,058 + -2.2
1,332,059 + +1.3
1,332,068 + -2.8
1,332,068 + -1.5
1,332,070 - +0.2
1,332,074 + -1.2
1,332,074 - +0.8
1,332,084 + +1.8
1,332,186 + -0.4
1,332,218 + -0.4
1,332,338 - 12458 mRNA_4090 0.11 -0.7

Or see this region's nucleotide sequence