Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4136

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_4136: 12504 - K19838 SST2 GTPase-activating protein SST2, at 1,439,896 to 1,442,005 12504

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,438,916 + -0.1
1,438,930 - -0.5
1,438,930 + +1.0
1,438,938 - +0.4
1,438,938 + +0.2
1,438,945 - -0.4
1,438,949 + +0.1
1,438,968 + -0.8
1,438,969 + -0.6
1,438,972 - -3.1
1,439,011 + -0.2
1,439,026 + -0.0
1,439,095 - -2.3
1,439,101 + +0.2
1,439,115 + +0.1
1,439,119 - -0.0
1,439,123 - +0.4
1,439,131 - -0.0
1,439,135 - -0.7
1,439,136 - -1.3
1,439,136 - +0.5
1,439,145 + +0.2
1,439,146 + +0.1
1,439,146 - +1.0
1,439,281 - -0.4
1,439,285 + -0.6
1,439,298 - -0.3
1,439,299 - -1.1
1,439,319 + -0.3
1,439,418 - -0.5
1,439,434 + -2.0
1,439,449 - +0.4
1,439,452 - +0.2
1,439,465 + -1.5
1,439,467 + -1.2
1,439,468 - -0.8
1,439,592 - -1.9
1,439,596 - -1.7
1,439,597 - -0.4
1,439,605 - -1.6
1,439,606 - +0.2
1,439,609 - -1.6
1,439,611 - -3.3
1,439,615 + -1.5
1,439,617 - -1.5
1,439,617 + -1.1
1,439,626 + -3.0
1,439,632 + -1.2
1,439,634 - -1.0
1,439,635 + -1.0
1,439,636 - -3.0
1,439,654 + -1.0
1,439,779 - -3.1
1,439,944 - +1.2
1,440,094 - -0.3
1,440,188 - 12504 mRNA_4136 0.14 -2.2
1,440,382 + 12504 mRNA_4136 0.23 -1.0
1,440,535 - 12504 mRNA_4136 0.30 -0.5
1,440,811 - 12504 mRNA_4136 0.43 -0.2
1,441,057 + 12504 mRNA_4136 0.55 -3.4
1,441,281 + 12504 mRNA_4136 0.66 -2.5
1,441,422 - 12504 mRNA_4136 0.72 -2.7
1,441,829 + -2.1
1,441,853 + -0.6
1,441,867 + -0.2
1,442,134 + -0.5
1,442,142 + -0.9
1,442,258 - -2.1
1,442,261 - -0.2
1,442,262 + +0.2
1,442,267 - +0.9
1,442,292 - +0.7
1,442,309 - -0.5
1,442,310 + +0.0
1,442,338 + +0.2
1,442,458 - -0.0
1,442,462 + -0.1
1,442,475 - -1.0
1,442,483 - +0.1
1,442,612 + -0.5
1,442,624 + +0.6
1,442,758 - -0.8
1,442,768 + -0.3
1,442,776 + +0.4
1,442,783 - -1.0
1,442,784 - -0.3
1,442,784 + -1.3
1,442,792 - +0.6
1,442,797 + -1.8
1,442,929 + +0.3
1,442,941 + +0.3
1,442,981 + -1.3

Or see this region's nucleotide sequence