Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4163

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12530 and 12531 are separated by 508 nucleotides12531 and 12532 are separated by 669 nucleotides mRNA_4162: 12530 - Hypothetical Protein, at 1,505,110 to 1,508,834 12530 mRNA_4163: 12531 - Hypothetical Protein, at 1,509,343 to 1,510,830 12531 mRNA_4164: 12532 - K02021 ABC.MR putative ABC transport system ATP-binding protein, at 1,511,500 to 1,513,697 12532

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,508,567 + +0.3
1,508,595 - -1.4
1,508,723 - -0.1
1,508,732 - -0.3
1,508,747 + -0.2
1,508,883 - +0.1
1,508,890 + -1.1
1,508,893 - +0.8
1,508,910 - -0.8
1,508,972 - -2.4
1,509,032 - -0.1
1,509,170 - -1.7
1,509,482 + -1.0
1,509,522 + 12531 mRNA_4163 0.12 +0.6
1,509,616 + 12531 mRNA_4163 0.18 -1.0
1,510,213 - 12531 mRNA_4163 0.58 -0.3
1,510,238 + 12531 mRNA_4163 0.60 -0.7
1,510,392 + 12531 mRNA_4163 0.70 +0.1
1,510,556 - 12531 mRNA_4163 0.82 +0.0
1,510,715 - +0.8
1,510,837 + +0.6
1,510,873 - -1.6
1,510,970 - -0.3
1,510,988 + -0.4
1,510,999 - +1.2
1,511,008 + -0.1
1,511,011 - +0.9
1,511,020 - -1.8
1,511,020 - -0.6
1,511,046 + -1.3
1,511,138 + +1.5
1,511,143 - +0.2
1,511,162 + -0.5
1,511,299 + -2.2
1,511,320 + -0.5
1,511,457 + +0.4
1,511,472 + +0.4
1,511,477 - -0.1
1,511,480 - -0.2
1,511,486 + +0.2
1,511,590 - -0.2
1,511,602 - -0.2
1,511,619 + -0.4
1,511,772 - 12532 mRNA_4164 0.12 -0.4
1,511,794 + 12532 mRNA_4164 0.13 +1.2

Or see this region's nucleotide sequence