Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4189

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12556 and 12557 are separated by 411 nucleotides12557 and 12558 are separated by 68 nucleotides mRNA_4188: 12556 - KOG4372 Predicted alpha/beta hydrolase, at 1,569,066 to 1,571,020 12556 mRNA_4189: 12557 - Hypothetical Protein, at 1,571,432 to 1,574,972 12557 mRNA_4190: 12558 - Hypothetical Protein, at 1,575,041 to 1,575,964 12558

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,570,879 - -0.1
1,570,883 + -0.4
1,571,010 - +2.1
1,571,019 + +0.9
1,571,145 - -1.0
1,571,156 + -2.1
1,571,166 + -0.0
1,571,172 - -0.5
1,571,182 + +0.9
1,571,182 + -2.1
1,571,182 + +0.8
1,571,183 + -0.6
1,571,184 - -0.0
1,571,191 + -0.4
1,571,197 - -0.2
1,571,202 - -0.6
1,571,202 - -0.4
1,571,207 + +0.2
1,571,222 + +0.6
1,575,198 - 12558 mRNA_4190 0.17 +0.7
1,575,209 - 12558 mRNA_4190 0.18 -0.3
1,575,519 - 12558 mRNA_4190 0.52 -1.7
1,575,650 - 12558 mRNA_4190 0.66 -1.3
1,575,969 + +0.3

Or see this region's nucleotide sequence