Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4198

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12565 and 12566 are separated by 49 nucleotides12566 and 12567 are separated by 384 nucleotides mRNA_4197: 12565 - K00512 CYP17A steroid 17alpha-monooxygenase / 17alpha-hydroxyprogesterone deacetylase, at 1,588,332 to 1,590,437 12565 mRNA_4198: 12566 - K00166 BCKDHA, bkdA1 2-oxoisovalerate dehydrogenase E1 component alpha subunit, at 1,590,487 to 1,592,266 12566 mRNA_4199: 12567 - KOG1303 Amino acid transporters, at 1,592,651 to 1,594,788 12567

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,589,660 - 12565 mRNA_4197 0.63 -0.2
1,590,082 - 12565 mRNA_4197 0.83 -1.5
1,590,103 + 12565 mRNA_4197 0.84 -1.3
1,590,385 - -2.1
1,591,418 + 12566 mRNA_4198 0.52 +0.7
1,591,427 - 12566 mRNA_4198 0.53 +0.4
1,591,736 - 12566 mRNA_4198 0.70 +0.2
1,591,983 + 12566 mRNA_4198 0.84 +0.6
1,592,016 + 12566 mRNA_4198 0.86 +0.1
1,592,150 - -1.7
1,592,157 - +0.8
1,592,207 + -0.8
1,592,319 + -1.0
1,592,386 - -0.6
1,592,398 + -1.3
1,592,514 - -2.0
1,592,526 + -2.2
1,592,528 + -0.6
1,592,850 - -0.1
1,593,064 + 12567 mRNA_4199 0.19 -0.7
1,593,207 - 12567 mRNA_4199 0.26 +0.5

Or see this region's nucleotide sequence