Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4253

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12620 and 12621 are separated by 619 nucleotides12621 and 12622 are separated by 232 nucleotides mRNA_4252: 12620 - HMMPfam-Carboxymuconolactone decarboxylase family-PF02627,HMMPfam-Alpha/beta hydrolase family-PF12697,PRINTS-Alpha/beta hydrolase fold signature-PR00111,SUPERFAMILY--SSF53474,SUPERFAMILY--SSF69118, at 1,715,834 to 1,717,453 12620 mRNA_4253: 12621 - BLAST Dimeric alpha-beta barrel [Ceraceosorus bombacis], at 1,718,073 to 1,718,994 12621 mRNA_4254: 12622 - HMMPfam-Lactonase, 7-bladed beta-propeller-PF10282,SUPERFAMILY--SSF75011, at 1,719,227 to 1,720,870 12622

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,717,191 - 12620 mRNA_4252 0.84 -0.8
1,717,266 + 12620 mRNA_4252 0.88 -1.3
1,717,266 + 12620 mRNA_4252 0.88 +0.5
1,717,372 + +1.0
1,717,487 + +0.7
1,717,514 - -0.6
1,717,523 + -0.2
1,717,541 + +0.1
1,717,572 - -0.3
1,717,680 - +1.5
1,717,822 - +1.6
1,717,854 + -0.1
1,717,855 + +0.2
1,717,861 - +0.1
1,718,434 + 12621 mRNA_4253 0.39 +0.4
1,718,524 - 12621 mRNA_4253 0.49 -0.5
1,718,755 - 12621 mRNA_4253 0.74 -0.7
1,719,178 + -0.6
1,719,197 - -0.8
1,719,282 + -0.4
1,719,322 - -0.3
1,719,740 - 12622 mRNA_4254 0.31 +1.8
1,719,859 - 12622 mRNA_4254 0.38 -1.3

Or see this region's nucleotide sequence